I know, I played the EGA, CD and FM-Towns version of the game. I still prefer the EGA one:
1. Retroarch is normie tier bloated trash. Use individual emulators FFS!
2. Just because it has more color, doesn't mean that is better. The VGA graphics where done in an amateurish and sloppy job. (banding, lack of contrast, poor understanding of lighting and shadows, awful shading)
3. The music is pre-recorder but is still synthetic and not orchestral and is somehow worst than the original.
4. Weird and unnecessary censorship (especially when what happens at the end is fully uncensored).
5. Cobb death scene unlocked in every difficulty instead of just being a reward for finishing the game in the highest difficulty.
This video goes in more detail:
Also I want to share the GDC Postmortem (which is unlisted for some reason):
A full playthrough of both versions simultaneously, for better comparation: