I guess i'll go with obsure tracks this time instead of falcom stuff.
Harvestella - Phantasmagoria
Can't explain this one without massive spoilers for the game, only that it's a dungeon theme.
For a game with almost no story, this track is quite emotional, especially considering how good it is.
Vampire Survivors - Extinguished Flame
This one is a simple town theme, but obviously a emotional one or it wouldn't be here.
Ar Tonelico - City in the Sky
This is also a town, but it's obvious from the sound how much emotion goes into it hinting at the tone of the game and story.
Summoner - Lenele Marketplace
My final one for this post is from Alundra, anyone who's played alundra knows just how dark the game is, which is surprising considering it's a game more or less copying 2d zelda, but because of that there's tons of emotional tracks, that said this specific track sticks out for me.
Alundra - The Shrine in the Lake